A. arenosa sequencing project

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Overview(Edit)

The polyploid (4n) Arabaidopsis (nee Cardaminopsis) arenosa genome is being sequenced as part of the Functional Genomics of Plant Polyploids NSF Plant Genome Project # 0077774. We are using a combination of paired-end and mate-paired Illumina reads to sequence to an approximate depth of 25x. Assemblies will be generated using Velvet and comparative analyses to the Arabidopsis lyrata and thaliana genomes will be performed.

News(Edit)

Data release(Edit)

While we prepare our data for formal release into the NCBI Short Read Archive, we are making the raw reads available at this site.

Sample 1(Edit)

17,794,664 76 bp paired end reads, average insert size 160 base pairs

Sample 2(Edit)

NN,NNN,NNN 51 bp paired end reads, average insert size 350 base pairs

Analysis(Edit)

Contact Information(Edit)

If you have questions or comments about this sequencing project, please contact Rob Martienssen (martiens@cshl.edu) or Matt Vaughn (vaughn@cshl.edu) at Cold Spring Harbor Laboratory.