A. arenosa sequencing project
Overview(Edit)
The polyploid (4n) Arabaidopsis (nee Cardaminopsis) arenosa genome is being sequenced as part of the Functional Genomics of Plant Polyploids NSF Plant Genome Project # 0077774. We are using a combination of paired-end and mate-paired Illumina reads to sequence to an approximate depth of 25x. Assemblies will be generated using Velvet and comparative analyses to the Arabidopsis lyrata and thaliana genomes will be performed.
Data release(Edit)
While we prepare our data for formal release into the NCBI Short Read Archive, we are making the raw reads available at this site.
Project Personnel(Edit)
- Rob Martienssen (PI)
- Matt Vaughn (coPI, Assembly and informatics)
- Milos Tanurdzic (Library construction)
- Dick McCombie (Sequencing)
- Melissa de la Bastide (Sequencing informatics)
- Phil Tully (Intern)
Contact Information(Edit)
If you have questions or comments about this sequencing project, please contact Rob Martienssen (martiens@cshl.edu) or Matt Vaughn (vaughn@cshl.edu) at Cold Spring Harbor Laboratory.